Long Term Health Care facility COVID-19 outbreaks in British Columbia, with 100 imputations of missing data

A dataset containing 100 replicates of LTHC covid-19 outbreaks in BC, Canada, each with a random imputation of missing symptom onset times.

BC_LTHC_outbreaks_100Imputs

Format

A list with 100 elements, corresponding to 100 imputations of missing symptom onset data, each with 6 sub-elements

Location

Long Term Health Care facility identifier

num_cases

Total number of COVID-19 cases identified in each location's outbreak

time_series

Daily symptom onset incidence in each location's outbreak e.g. time_series[[2]][3] gives the number of cases with symptom onset on the third day of Location[2]'s outbreak.

capacity

Resident capacity of each location

reported_date

Date of first case reported in each location's outbreak

case_matrix

time_series objects combined into a matrix, where each column is a different facility outbreak and rows 1,...,n give the number of cases with symptom onset on day 1,...,n in that outbreak. Used in Stan model fitting.

Source

British Columbia Centre for Disease Control